Another in the series of posts about file types! This time, a quick note about importing .nrrd image stacks into Python. Download and unzip pynrrd from
here. In a terminal, cd into the directory, and run
python setup.py install
In Python the usage is very straightforward:
import nrrd
frames, options = nrrd.read(fileName)
3 comments:
I'm getting the following error:
TypeError: coercing to Unicode: need string or buffer, module found
Can you help me? I entered:
frames, options = nrrd.read(nrrd)
Hi Lana,
In order to read a file named 'filename.nrrd' you need to navigate to the directory the file is in, then enter:
import nrrd
frames, options = nrrd.read('filename.nrrd')
Note that in your case you gave the same variable name, nrrd, to both the module you imported and the file name you are trying to open.
Hello,
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